Accelerated probabilistic inference of RNA structure evolution
2005; 6: 73
Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator
2005; 6: 87
Building a protein name dictionary from full text: a machine learning term extraction approach
2005; 6: 88
A method for aligning RNA secondary structures and its application to RNA motif detection
2005; 6: 89
Individual sequences in large sets of gene sequences may be distinguished efficiently by combinations of shared sub-sequences
2005; 6: 90
'PACLIMS': A component LIM system for high-throughput functional genomic analysis
2005; 6: 94
Many accurate small-discriminatory feature subsets exist in microarray transcript data: biomarker discovery
2005; 6: 97
Ab initio identification of putative human transcription factor binding sites by comparative genomics
2005; 6: 110
Shortest triplet clustering: reconstructing large phylogenies using representative sets
2005; 6: 92
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
2005; 6: 99
Filtering high-throughput protein-protein interaction data using a combination of genomic features
2005; 6: 100
Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments
2005; 6: 106
Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements
2005; 6: 107
Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test
2005; 6: 109
Confirmation of human protein interaction data by human expression data
2005; 6: 112
A restraint molecular dynamics and simulated annealing approach for protein homology modeling utilizing mean angles
2005; 6: 91
Detailed protein sequence alignment based on Spectral Similarity Score (SSS)
2005; 6: 105
Scoredist: A simple and robust protein sequence distance estimator
2005; 6: 108
Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals
2005; 6: 111
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
2005; 6: 79
Scoring functions for transcription factor binding site prediction
2005; 6: 84
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
2005; 6: 116
BMC Bioinformatics comes of age
2005; 6: 140
Chemistry in Bioinformatics
2005; 6: 141
Integration of the Gene Ontology into an object-oriented architecture
2005; 6: 113
Visualization methods for statistical analysis of microarray clusters
2005; 6: 115
Are scale-free networks robust to measurement errors?
2005; 6: 119
The effects of normalization on the correlation structure of microarray data
2005; 6: 120
Vestige: Maximum likelihood phylogenetic footprinting
2005; 6: 130
SeqDoC: rapid SNP and mutation detection by direct comparison of DNA sequence chromatograms
2005; 6: 133
Discovery of protein-protein interactions using a combination of linguistic, statistical and graphical information
2005; 6: 143
Genome comparison without alignment using shortest unique substrings
2005; 6: 123
Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data
2005; 6: 127
Robust detection of periodic time series measured from biological systems
2005; 6: 117
Computing expectation values for RNA motifs using discrete convolutions
2005; 6: 118
A multistep bioinformatic approach detects putative regulatory elements in gene promoters
2005; 6: 121
SuperLigands – a database of ligand structures derived from the Protein Data Bank
2005; 6: 122
arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays
2005; 6: 124
Comparative analysis of chromatin landscape in regulatory regions of human housekeeping and tissue specific genes
2005; 6: 126
Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models
2005; 6: 128