Scoring functions for transcription factor binding site prediction
2005; 6: 84
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
2005; 6: 116
BMC Bioinformatics comes of age
2005; 6: 140
Chemistry in Bioinformatics
2005; 6: 141
Integration of the Gene Ontology into an object-oriented architecture
2005; 6: 113
Visualization methods for statistical analysis of microarray clusters
2005; 6: 115
Are scale-free networks robust to measurement errors?
2005; 6: 119
The effects of normalization on the correlation structure of microarray data
2005; 6: 120
Vestige: Maximum likelihood phylogenetic footprinting
2005; 6: 130
SeqDoC: rapid SNP and mutation detection by direct comparison of DNA sequence chromatograms
2005; 6: 133
Discovery of protein-protein interactions using a combination of linguistic, statistical and graphical information
2005; 6: 143
Genome comparison without alignment using shortest unique substrings
2005; 6: 123
Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data
2005; 6: 127
Robust detection of periodic time series measured from biological systems
2005; 6: 117
Computing expectation values for RNA motifs using discrete convolutions
2005; 6: 118
A multistep bioinformatic approach detects putative regulatory elements in gene promoters
2005; 6: 121
SuperLigands – a database of ligand structures derived from the Protein Data Bank
2005; 6: 122
arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays
2005; 6: 124
Comparative analysis of chromatin landscape in regulatory regions of human housekeeping and tissue specific genes
2005; 6: 126
Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models
2005; 6: 128
Considerations when using the significance analysis of microarrays (SAM) algorithm
2005; 6: 129
Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method
2005; 6: 132
Empirical codon substitution matrix
2005; 6: 134
Which gene did you mean?
2005; 6: 142
CAGER: classification analysis of gene expression regulation using multiple information sources
2005; 6: 114
Gene finding in the chicken genome
2005; 6: 131
libcov: A C++ bioinformatic library to manipulate protein structures, sequence alignments and phylogeny
2005; 6: 138
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
2005; 6: 156
Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking
2005; 6: 125
YANA – a software tool for analyzing flux modes, gene-expression and enzyme activities
2005; 6: 135
AVID: An integrative framework for discovering functional relationships among proteins
2005; 6: 136
PentaPlot: A software tool for the illustration of genome mosaicism
2005; 6: 139
AnovArray: a set of SAS macros for the analysis of variance of gene expression data
2005; 6: 150
Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation
2005; 6: 157
SplitTester : software to identify domains responsible for functional divergence in protein family
2005; 6: 137
Visualization-based discovery and analysis of genomic aberrations in microarray data
2005; 6: 146
Alkahest NuclearBLAST : a user-friendly BLAST management and analysis system
2005; 6: 147
Feature selection and classification for microarray data analysis: Evolutionary methods for identifying predictive genes
2005; 6: 148
Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection
2005; 6: 154
Normal uniform mixture differential gene expression detection for cDNA microarrays
2005; 6: 173
Satellog: A database for the identification and prioritization of satellite repeats in disease association studies
2005; 6: 145
Sequence signature analysis of chromosome identity in three Drosophila species
2005; 6: 158
AutoFACT: An Automatic Functional Annotation and Classification Tool
2005; 6: 151
pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties
2005; 6: 152
Multiple sequence alignments of partially coding nucleic acid sequences
2005; 6: 160
Species-specific analysis of protein sequence motifs using mutual information
2005; 6: 164
Prediction of twin-arginine signal peptides
2005; 6: 167
DCD – a novel plant specific domain in proteins involved in development and programmed cell death
2005; 6: 169
SeqX: a tool to detect, analyze and visualize residue co-locations in protein and nucleic acid structures
2005; 6: 170
PAGE: Parametric Analysis of Gene Set Enrichment
2005; 6: 144
Thesaurus-based disambiguation of gene symbols
2005; 6: 149
CGH-Profiler: Data mining based on genomic aberration profiles
2005; 6: 188
Information theory-based algorithm for in silico prediction of PCR products with whole genomic sequences as templates
2005; 6: 190
Signal transduction pathway profiling of individual tumor samples
2005; 6: 163
Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein
2005; 6: 176
Approaching the taxonomic affiliation of unidentified sequences in public databases – an example from the mycorrhizal fungi
2005; 6: 178
Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops
2005; 6: 171
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays
2005; 6: 175
Processing methods for differential analysis of LC/MS profile data
2005; 6: 179
Communication and re-use of chemical information in bioscience
2005; 6: 180