Artículos de la revista "BMC Bioinformatics"
1060 artículos en 53 páginas: 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 ... 53
- PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability2005; 6: 185
- Rank-invariant resampling based estimation of false discovery rate for analysis of small sample microarray data2005; 6: 187
- Storing, linking, and mining microarray databases using SRS2005; 6: 192
- An empirical analysis of training protocols for probabilistic gene finders2005; 6: 193
- Inconsistencies over time in 5% of NetAffx probe-to-gene annotations2005; 6: 183
- A computational approach for identifying pathogenicity islands in prokaryotic genomes2005; 6: 184
- FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform2005; 6: 198
- Iterative approach to model identification of biological networks2005; 6: 155
- FACT – a framework for the functional interpretation of high-throughput experiments2005; 6: 161
- Quality assessment of microarrays: Visualization of spatial artifacts and quantitation of regional biases2005; 6: 166
- The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function2005; 6: 172
- Dissecting systems-wide data using mixture models: application to identify affected cellular processes2005; 6: 177
- Sample phenotype clusters in high-density oligonucleotide microarray data sets are revealed using Isomap, a nonlinear algorithm2005; 6: 195
- Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach2005; 6: 165
- Theme discovery from gene lists for identification and viewing of multiple functional groups2005; 6: 162
- High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID)2005; 6: 168
- Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines2005; 6: 174
- Vector analysis as a fast and easy method to compare gene expression responses between different experimental backgrounds2005; 6: 181
- GObar: A Gene Ontology based analysis and visualization tool for gene sets2005; 6: 189
- Functional annotation by identification of local surface similarities: a novel tool for structural genomics2005; 6: 194
- Squid – a simple bioinformatics grid2005; 6: 197
- PALSSE: A program to delineate linear secondary structural elements from protein structures2005; 6: 202
- Full cyclic coordinate descent: solving the protein loop closure problem in Cα space2005; 6: 159
- Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity2005; 6: 182
- Nonparametric tests for differential gene expression and interaction effects in multi-factorial microarray experiments2005; 6: 186
- COPASAAR – A database for proteomic analysis of single amino acid repeats2005; 6: 196
- A comparative review of estimates of the proportion unchanged genes and the false discovery rate2005; 6: 199
- DynGO: a tool for visualizing and mining of Gene Ontology and its associations2005; 6: 201
- Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants2005; 6: 203
- FiatFlux – a software for metabolic flux analysis from 13C-glucose experiments2005; 6: 209
- Evaluation of normalization methods for cDNA microarray data by k-NN classification2005; 6: 191
- Genomic multiple sequence alignments: refinement using a genetic algorithm2005; 6: 200
- Tandem machine learning for the identification of genes regulated by transcription factors2005; 6: 204
- stam – a Bioconductor compliant R package for structured analysis of microarray data2005; 6: 211
- Improved prediction of critical residues for protein function based on network and phylogenetic analyses2005; 6: 213
- JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture2005; 6: 216
- Effective ambiguity checking in biosequence analysis2005; 6: 153
- Variation in structural location and amino acid conservation of functional sites in protein domain families2005; 6: 210
- TmaDB: a repository for tissue microarray data2005; 6: 218
- A comparative study of discriminating human heart failure etiology using gene expression profiles2005; 6: 205
- An edit script for taxonomic classifications2005; 6: 208
- Sources of variation in Affymetrix microarray experiments2005; 6: 214
- A protein domain interaction interface database: InterPare2005; 6: 207
- A new dynamical layout algorithm for complex biochemical reaction networks2005; 6: 212
- Generalizations of Markov model to characterize biological sequences2005; 6: 219
- A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage2005; 6: 220
- Assessing local structural perturbations in proteins2005; 6: 226
- Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks2005; 6: 227
- ProbeMaker: an extensible framework for design of sets of oligonucleotide probes2005; 6: 229
- Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"2005; 6: 206
- Micro-Mar: a database for dynamic representation of marine microbial biodiversity2005; 6: 222
- SUPERFICIAL – Surface mapping of proteins via structure-based peptide library design2005; 6: 223
- Modeling the emergence of multi-protein dynamic structures by principles of self-organization through the use of 3DSpi, a multi-agent-based software2005; 6: 228
- Versatile and declarative dynamic programming using pair algebras2005; 6: 224
- Pathway level analysis of gene expression using singular value decomposition2005; 6: 225
- Chromosomal clustering of a human transcriptome reveals regulatory background2005; 6: 230
- EXPANDER – an integrative program suite for microarray data analysis2005; 6: 232
- GeneRank: Using search engine technology for the analysis of microarray experiments2005; 6: 233
- SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution2005; 6: 236
- Measuring similarities between transcription factor binding sites2005; 6: 237
- Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data2005; 6: 239
- Sequence variation in ligand binding sites in proteins2005; 6: 240
- Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural networks2005; 6: 242
- A linear memory algorithm for Baum-Welch training2005; 6: 231
- Quality determination and the repair of poor quality spots in array experiments2005; 6: 234
- An analysis of extensible modelling for functional genomics data2005; 6: 235
- Mathematical design of prokaryotic clone-based microarrays2005; 6: 238
- Phylogenetic detection of conserved gene clusters in microbial genomes2005; 6: 243
- T.I.M.S: TaqMan Information Management System, tools to organize data flow in a genotyping laboratory2005; 6: 246
- htSNPer1.0: software for haplotype block partition and htSNPs selection2005; 6: 38
- CoPub Mapper: mining MEDLINE based on search term co-publication2005; 6: 51
- WEBnm@: a web application for normal mode analyses of proteins2005; 6: 52
- Evolutionary sequence analysis of complete eukaryote genomes2005; 6: 53
- In silico microdissection of microarray data from heterogeneous cell populations2005; 6: 54
- Speeding disease gene discovery by sequence based candidate prioritization2005; 6: 55
- TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins2005; 6: 56
- Combining Affymetrix microarray results2005; 6: 57
- Towards precise classification of cancers based on robust gene functional expression profiles2005; 6: 58
- SNPHunter: a bioinformatic software for single nucleotide polymorphism data acquisition and management2005; 6: 60
- Graphical representation of ribosomal RNA probe accessibility data using ARB software package2005; 6: 61
- A standard curve based method for relative real time PCR data processing2005; 6: 62
- MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution2005; 6: 64
- "Harshlighting" small blemishes on microarrays2005; 6: 65
- Evaluation of gene importance in microarray data based upon probability of selection2005; 6: 67
- Feature selection and nearest centroid classification for protein mass spectrometry2005; 6: 68
- Wildfire: distributed, Grid-enabled workflow construction and execution2005; 6: 69
- Prediction of a common structural scaffold for proteasome lid, COP9-signalosome and eIF3 complexes2005; 6: 71
- GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environments2005; 6: 72
- Ranking the whole MEDLINE database according to a large training set using text indexing2005; 6: 75
- CGMIM: Automated text-mining of Online Mendelian Inheritance in Man (OMIM) to identify genetically-associated cancers and candidate genes2005; 6: 78
- CGHPRO – A comprehensive data analysis tool for array CGH2005; 6: 85
- A comparison of RNA folding measures2005; 6: 241
- Differentiation of regions with atypical oligonucleotide composition in bacterial genomes2005; 6: 251
- CoaSim: A flexible environment for simulating genetic data under coalescent models2005; 6: 252
- ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related proteins2005; 6: 253
- Human promoter genomic composition demonstrates non-random groupings that reflect general cellular function2005; 6: 259
- A method of precise mRNA/DNA homology-based gene structure prediction2005; 6: 261
- SPdb – a signal peptide database2005; 6: 249
- ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences2005; 6: 244
- MASQOT: a method for cDNA microarray spot quality control2005; 6: 250
- Evaluating eukaryotic secreted protein prediction2005; 6: 256
- Statistical distributions of optimal global alignment scores of random protein sequences2005; 6: 257
- SpectralNET – an application for spectral graph analysis and visualization2005; 6: 260
- Better prediction of protein contact number using a support vector regression analysis of amino acid sequence2005; 6: 248
- Extension of Lander-Waterman theory for sequencing filtered DNA libraries2005; 6: 245
- Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis2005; 6: 247
- Prediction of β-barrel membrane proteins by searching for restricted domains2005; 6: 254
- The modeled structure of the RNA dependent RNA polymerase of GBV-C Virus suggests a role for motif E in Flaviviridae RNA polymerases2005; 6: 255
- Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification2005; 6: 258
- Using hexamers to predict cis-regulatory motifs in Drosophila2005; 6: 262
- maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination2005; 6: 264
- Alternative splicing and protein function2005; 6: 266
- Automated methods of predicting the function of biological sequences using GO and BLAST2005; 6: 272
- MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data2005; 6: 268
- The yeast kinome displays scale free topology with functional hub clusters2005; 6: 271
- Discover protein sequence signatures from protein-protein interaction data2005; 6: 277
- ErmineJ: Tool for functional analysis of gene expression data sets2005; 6: 269
- Ancestral sequence alignment under optimal conditions2005; 6: 273
- A stepwise framework for the normalization of array CGH data2005; 6: 274
- Computational identification of strain-, species- and genus-specific proteins2005; 6: 279