Artículos de la revista "BMC Bioinformatics"
1060 artículos en 53 páginas: 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 ... 53
- Squid – a simple bioinformatics grid2005; 6: 197
- PALSSE: A program to delineate linear secondary structural elements from protein structures2005; 6: 202
- Full cyclic coordinate descent: solving the protein loop closure problem in Cα space2005; 6: 159
- Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity2005; 6: 182
- Nonparametric tests for differential gene expression and interaction effects in multi-factorial microarray experiments2005; 6: 186
- COPASAAR – A database for proteomic analysis of single amino acid repeats2005; 6: 196
- A comparative review of estimates of the proportion unchanged genes and the false discovery rate2005; 6: 199
- DynGO: a tool for visualizing and mining of Gene Ontology and its associations2005; 6: 201
- Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants2005; 6: 203
- FiatFlux – a software for metabolic flux analysis from 13C-glucose experiments2005; 6: 209
- Evaluation of normalization methods for cDNA microarray data by k-NN classification2005; 6: 191
- Genomic multiple sequence alignments: refinement using a genetic algorithm2005; 6: 200
- Tandem machine learning for the identification of genes regulated by transcription factors2005; 6: 204
- stam – a Bioconductor compliant R package for structured analysis of microarray data2005; 6: 211
- Improved prediction of critical residues for protein function based on network and phylogenetic analyses2005; 6: 213
- JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture2005; 6: 216
- Effective ambiguity checking in biosequence analysis2005; 6: 153
- Variation in structural location and amino acid conservation of functional sites in protein domain families2005; 6: 210
- TmaDB: a repository for tissue microarray data2005; 6: 218
- A comparative study of discriminating human heart failure etiology using gene expression profiles2005; 6: 205
- An edit script for taxonomic classifications2005; 6: 208
- Sources of variation in Affymetrix microarray experiments2005; 6: 214
- A protein domain interaction interface database: InterPare2005; 6: 207
- A new dynamical layout algorithm for complex biochemical reaction networks2005; 6: 212
- Generalizations of Markov model to characterize biological sequences2005; 6: 219
- A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage2005; 6: 220
- Assessing local structural perturbations in proteins2005; 6: 226
- Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks2005; 6: 227
- ProbeMaker: an extensible framework for design of sets of oligonucleotide probes2005; 6: 229
- Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"2005; 6: 206
- Micro-Mar: a database for dynamic representation of marine microbial biodiversity2005; 6: 222
- SUPERFICIAL – Surface mapping of proteins via structure-based peptide library design2005; 6: 223
- Modeling the emergence of multi-protein dynamic structures by principles of self-organization through the use of 3DSpi, a multi-agent-based software2005; 6: 228
- Versatile and declarative dynamic programming using pair algebras2005; 6: 224
- Pathway level analysis of gene expression using singular value decomposition2005; 6: 225
- Chromosomal clustering of a human transcriptome reveals regulatory background2005; 6: 230
- EXPANDER – an integrative program suite for microarray data analysis2005; 6: 232
- GeneRank: Using search engine technology for the analysis of microarray experiments2005; 6: 233
- SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution2005; 6: 236
- Measuring similarities between transcription factor binding sites2005; 6: 237
- Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data2005; 6: 239
- Sequence variation in ligand binding sites in proteins2005; 6: 240
- Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural networks2005; 6: 242
- A linear memory algorithm for Baum-Welch training2005; 6: 231
- Quality determination and the repair of poor quality spots in array experiments2005; 6: 234
- An analysis of extensible modelling for functional genomics data2005; 6: 235
- Mathematical design of prokaryotic clone-based microarrays2005; 6: 238
- Phylogenetic detection of conserved gene clusters in microbial genomes2005; 6: 243
- T.I.M.S: TaqMan Information Management System, tools to organize data flow in a genotyping laboratory2005; 6: 246
- htSNPer1.0: software for haplotype block partition and htSNPs selection2005; 6: 38
- CoPub Mapper: mining MEDLINE based on search term co-publication2005; 6: 51
- WEBnm@: a web application for normal mode analyses of proteins2005; 6: 52
- Evolutionary sequence analysis of complete eukaryote genomes2005; 6: 53
- In silico microdissection of microarray data from heterogeneous cell populations2005; 6: 54
- Speeding disease gene discovery by sequence based candidate prioritization2005; 6: 55
- TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins2005; 6: 56
- Combining Affymetrix microarray results2005; 6: 57
- Towards precise classification of cancers based on robust gene functional expression profiles2005; 6: 58
- SNPHunter: a bioinformatic software for single nucleotide polymorphism data acquisition and management2005; 6: 60
- Graphical representation of ribosomal RNA probe accessibility data using ARB software package2005; 6: 61
- A standard curve based method for relative real time PCR data processing2005; 6: 62
- MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution2005; 6: 64
- "Harshlighting" small blemishes on microarrays2005; 6: 65
- Evaluation of gene importance in microarray data based upon probability of selection2005; 6: 67
- Feature selection and nearest centroid classification for protein mass spectrometry2005; 6: 68
- Wildfire: distributed, Grid-enabled workflow construction and execution2005; 6: 69
- Prediction of a common structural scaffold for proteasome lid, COP9-signalosome and eIF3 complexes2005; 6: 71
- GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environments2005; 6: 72
- Ranking the whole MEDLINE database according to a large training set using text indexing2005; 6: 75
- CGMIM: Automated text-mining of Online Mendelian Inheritance in Man (OMIM) to identify genetically-associated cancers and candidate genes2005; 6: 78
- CGHPRO – A comprehensive data analysis tool for array CGH2005; 6: 85
- A comparison of RNA folding measures2005; 6: 241
- Differentiation of regions with atypical oligonucleotide composition in bacterial genomes2005; 6: 251
- CoaSim: A flexible environment for simulating genetic data under coalescent models2005; 6: 252
- ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related proteins2005; 6: 253
- Human promoter genomic composition demonstrates non-random groupings that reflect general cellular function2005; 6: 259
- A method of precise mRNA/DNA homology-based gene structure prediction2005; 6: 261
- SPdb – a signal peptide database2005; 6: 249
- ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences2005; 6: 244
- MASQOT: a method for cDNA microarray spot quality control2005; 6: 250
- Evaluating eukaryotic secreted protein prediction2005; 6: 256
- Statistical distributions of optimal global alignment scores of random protein sequences2005; 6: 257
- SpectralNET – an application for spectral graph analysis and visualization2005; 6: 260
- Better prediction of protein contact number using a support vector regression analysis of amino acid sequence2005; 6: 248
- Extension of Lander-Waterman theory for sequencing filtered DNA libraries2005; 6: 245
- Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis2005; 6: 247
- Prediction of β-barrel membrane proteins by searching for restricted domains2005; 6: 254
- The modeled structure of the RNA dependent RNA polymerase of GBV-C Virus suggests a role for motif E in Flaviviridae RNA polymerases2005; 6: 255
- Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification2005; 6: 258
- Using hexamers to predict cis-regulatory motifs in Drosophila2005; 6: 262
- maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination2005; 6: 264
- Alternative splicing and protein function2005; 6: 266
- Automated methods of predicting the function of biological sequences using GO and BLAST2005; 6: 272
- MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data2005; 6: 268
- The yeast kinome displays scale free topology with functional hub clusters2005; 6: 271
- Discover protein sequence signatures from protein-protein interaction data2005; 6: 277
- ErmineJ: Tool for functional analysis of gene expression data sets2005; 6: 269
- Ancestral sequence alignment under optimal conditions2005; 6: 273
- A stepwise framework for the normalization of array CGH data2005; 6: 274
- Computational identification of strain-, species- and genus-specific proteins2005; 6: 279
- Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast2005; 6: 270
- Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes2005; 6: 265
- Identification of clustered microRNAs using an ab initio prediction method2005; 6: 267
- Selecting additional tag SNPs for tolerating missing data in genotyping2005; 6: 263
- Principal component analysis for predicting transcription-factor binding motifs from array-derived data2005; 6: 276
- An algorithm for the determination and quantification of components of nucleic acid mixtures based on single sequencing reactions2005; 6: 281
- Multiple sequence alignment accuracy and evolutionary distance estimation2005; 6: 278
- ArrayQuest: a web resource for the analysis of DNA microarray data2005; 6: 287
- SNP-VISTA: An interactive SNP visualization tool2005; 6: 292
- An SVM-based system for predicting protein subnuclear localizations2005; 6: 291
- DSD – An integrated, web-accessible database of Dehydrogenase Enzyme Stereospecificities2005; 6: 283
- Efficient analysis and extraction of MS/MS result data from Mascot™ result files2005; 6: 290
- Kalign – an accurate and fast multiple sequence alignment algorithm2005; 6: 298
- Identification of significant periodic genes in microarray gene expression data2005; 6: 286
- A microarray data-based semi-kinetic method for predicting quantitative dynamics of genetic networks2005; 6: 299
- Oligomeric protein structure networks: insights into protein-protein interactions2005; 6: 296
- PSE: A tool for browsing a large amount of MEDLINE/PubMed abstracts with gene names and common words as the keywords2005; 6: 295
- Genome-wide identification of the regulatory targets of a transcription factor using biochemical characterization and computational genomic analysis2005; 6: 275
- Linking enzyme sequence to function using conserved property difference locator to identify and annotate positions likely to control specific functionality2005; 6: 284
- Evolutionary programming as a platform for in silico metabolic engineering2005; 6: 308
- InterferenceAnalyzer: Tools for the analysis and simulation of multi-locus genetic data2005; 6: 297
- Harshlight: a "corrective make-up" program for microarray chips2005; 6: 294
- WebArray: an online platform for microarray data analysis2005; 6: 306
- Genetic interaction motif finding by expectation maximization – a novel statistical model for inferring gene modules from synthetic lethality2005; 6: 288
- GenClust: A genetic algorithm for clustering gene expression data2005; 6: 289
- Analysis of concordance of different haplotype block partitioning algorithms2005; 6: 303
- Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process2005; 6: 285
- Internet-based profiler system as integrative framework to support translational research2005; 6: 304
- The distance-profile representation and its application to detection of distantly related protein families2005; 6: 282
- The Gene Set Builder: collation, curation, and distribution of sets of genes2005; 6: 305
- Construction of a nasopharyngeal carcinoma 2D/MS repository with Open Source XML Database – Xindice2006; 7: 13
- SuperMimic – Fitting peptide mimetics into protein structures2006; 7: 11
- A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators2005; 6: 301
- ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes2006; 7: 9
- preAssemble: a tool for automatic sequencer trace data processing2006; 7: 22
- Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine2005; 6: 310
- Finding biological process modifications in cancer tissues by mining gene expression correlations2006; 7: 6
- Fast-Find: A novel computational approach to analyzing combinatorial motifs2006; 7: 1
- Evaluation of methods for oligonucleotide array data via quantitative real-time PCR2006; 7: 23
- An approach for clustering gene expression data with error information2006; 7: 17