Artículos de la revista "BMC Bioinformatics"
1060 artículos en 53 páginas: 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 ... 53
- An edit script for taxonomic classifications2005; 6: 208
- Sources of variation in Affymetrix microarray experiments2005; 6: 214
- A protein domain interaction interface database: InterPare2005; 6: 207
- A new dynamical layout algorithm for complex biochemical reaction networks2005; 6: 212
- Generalizations of Markov model to characterize biological sequences2005; 6: 219
- A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage2005; 6: 220
- Assessing local structural perturbations in proteins2005; 6: 226
- Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks2005; 6: 227
- ProbeMaker: an extensible framework for design of sets of oligonucleotide probes2005; 6: 229
- Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"2005; 6: 206
- Micro-Mar: a database for dynamic representation of marine microbial biodiversity2005; 6: 222
- SUPERFICIAL – Surface mapping of proteins via structure-based peptide library design2005; 6: 223
- Modeling the emergence of multi-protein dynamic structures by principles of self-organization through the use of 3DSpi, a multi-agent-based software2005; 6: 228
- Versatile and declarative dynamic programming using pair algebras2005; 6: 224
- Pathway level analysis of gene expression using singular value decomposition2005; 6: 225
- Chromosomal clustering of a human transcriptome reveals regulatory background2005; 6: 230
- EXPANDER – an integrative program suite for microarray data analysis2005; 6: 232
- GeneRank: Using search engine technology for the analysis of microarray experiments2005; 6: 233
- SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution2005; 6: 236
- Measuring similarities between transcription factor binding sites2005; 6: 237
- Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data2005; 6: 239
- Sequence variation in ligand binding sites in proteins2005; 6: 240
- Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural networks2005; 6: 242
- A linear memory algorithm for Baum-Welch training2005; 6: 231
- Quality determination and the repair of poor quality spots in array experiments2005; 6: 234
- An analysis of extensible modelling for functional genomics data2005; 6: 235
- Mathematical design of prokaryotic clone-based microarrays2005; 6: 238
- Phylogenetic detection of conserved gene clusters in microbial genomes2005; 6: 243
- T.I.M.S: TaqMan Information Management System, tools to organize data flow in a genotyping laboratory2005; 6: 246
- htSNPer1.0: software for haplotype block partition and htSNPs selection2005; 6: 38
- CoPub Mapper: mining MEDLINE based on search term co-publication2005; 6: 51
- WEBnm@: a web application for normal mode analyses of proteins2005; 6: 52
- Evolutionary sequence analysis of complete eukaryote genomes2005; 6: 53
- In silico microdissection of microarray data from heterogeneous cell populations2005; 6: 54
- Speeding disease gene discovery by sequence based candidate prioritization2005; 6: 55
- TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins2005; 6: 56
- Combining Affymetrix microarray results2005; 6: 57
- Towards precise classification of cancers based on robust gene functional expression profiles2005; 6: 58
- SNPHunter: a bioinformatic software for single nucleotide polymorphism data acquisition and management2005; 6: 60
- Graphical representation of ribosomal RNA probe accessibility data using ARB software package2005; 6: 61
- A standard curve based method for relative real time PCR data processing2005; 6: 62
- MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution2005; 6: 64
- "Harshlighting" small blemishes on microarrays2005; 6: 65
- Evaluation of gene importance in microarray data based upon probability of selection2005; 6: 67
- Feature selection and nearest centroid classification for protein mass spectrometry2005; 6: 68
- Wildfire: distributed, Grid-enabled workflow construction and execution2005; 6: 69
- Prediction of a common structural scaffold for proteasome lid, COP9-signalosome and eIF3 complexes2005; 6: 71
- GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environments2005; 6: 72
- Ranking the whole MEDLINE database according to a large training set using text indexing2005; 6: 75
- CGMIM: Automated text-mining of Online Mendelian Inheritance in Man (OMIM) to identify genetically-associated cancers and candidate genes2005; 6: 78
- CGHPRO – A comprehensive data analysis tool for array CGH2005; 6: 85
- A comparison of RNA folding measures2005; 6: 241
- Differentiation of regions with atypical oligonucleotide composition in bacterial genomes2005; 6: 251
- CoaSim: A flexible environment for simulating genetic data under coalescent models2005; 6: 252
- ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related proteins2005; 6: 253
- Human promoter genomic composition demonstrates non-random groupings that reflect general cellular function2005; 6: 259
- A method of precise mRNA/DNA homology-based gene structure prediction2005; 6: 261
- SPdb – a signal peptide database2005; 6: 249
- ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences2005; 6: 244
- MASQOT: a method for cDNA microarray spot quality control2005; 6: 250
- Evaluating eukaryotic secreted protein prediction2005; 6: 256
- Statistical distributions of optimal global alignment scores of random protein sequences2005; 6: 257
- SpectralNET – an application for spectral graph analysis and visualization2005; 6: 260
- Better prediction of protein contact number using a support vector regression analysis of amino acid sequence2005; 6: 248
- Extension of Lander-Waterman theory for sequencing filtered DNA libraries2005; 6: 245
- Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis2005; 6: 247
- Prediction of β-barrel membrane proteins by searching for restricted domains2005; 6: 254
- The modeled structure of the RNA dependent RNA polymerase of GBV-C Virus suggests a role for motif E in Flaviviridae RNA polymerases2005; 6: 255
- Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification2005; 6: 258
- Using hexamers to predict cis-regulatory motifs in Drosophila2005; 6: 262
- maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination2005; 6: 264
- Alternative splicing and protein function2005; 6: 266
- Automated methods of predicting the function of biological sequences using GO and BLAST2005; 6: 272
- MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data2005; 6: 268
- The yeast kinome displays scale free topology with functional hub clusters2005; 6: 271
- Discover protein sequence signatures from protein-protein interaction data2005; 6: 277
- ErmineJ: Tool for functional analysis of gene expression data sets2005; 6: 269
- Ancestral sequence alignment under optimal conditions2005; 6: 273
- A stepwise framework for the normalization of array CGH data2005; 6: 274
- Computational identification of strain-, species- and genus-specific proteins2005; 6: 279
- Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast2005; 6: 270
- Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes2005; 6: 265
- Identification of clustered microRNAs using an ab initio prediction method2005; 6: 267
- Selecting additional tag SNPs for tolerating missing data in genotyping2005; 6: 263
- Principal component analysis for predicting transcription-factor binding motifs from array-derived data2005; 6: 276
- An algorithm for the determination and quantification of components of nucleic acid mixtures based on single sequencing reactions2005; 6: 281
- Multiple sequence alignment accuracy and evolutionary distance estimation2005; 6: 278
- ArrayQuest: a web resource for the analysis of DNA microarray data2005; 6: 287
- SNP-VISTA: An interactive SNP visualization tool2005; 6: 292
- An SVM-based system for predicting protein subnuclear localizations2005; 6: 291
- DSD – An integrated, web-accessible database of Dehydrogenase Enzyme Stereospecificities2005; 6: 283
- Efficient analysis and extraction of MS/MS result data from Mascot™ result files2005; 6: 290
- Kalign – an accurate and fast multiple sequence alignment algorithm2005; 6: 298
- Identification of significant periodic genes in microarray gene expression data2005; 6: 286
- A microarray data-based semi-kinetic method for predicting quantitative dynamics of genetic networks2005; 6: 299
- Oligomeric protein structure networks: insights into protein-protein interactions2005; 6: 296
- PSE: A tool for browsing a large amount of MEDLINE/PubMed abstracts with gene names and common words as the keywords2005; 6: 295
- Genome-wide identification of the regulatory targets of a transcription factor using biochemical characterization and computational genomic analysis2005; 6: 275
- Linking enzyme sequence to function using conserved property difference locator to identify and annotate positions likely to control specific functionality2005; 6: 284
- Evolutionary programming as a platform for in silico metabolic engineering2005; 6: 308
- InterferenceAnalyzer: Tools for the analysis and simulation of multi-locus genetic data2005; 6: 297
- Harshlight: a "corrective make-up" program for microarray chips2005; 6: 294
- WebArray: an online platform for microarray data analysis2005; 6: 306
- Genetic interaction motif finding by expectation maximization – a novel statistical model for inferring gene modules from synthetic lethality2005; 6: 288
- GenClust: A genetic algorithm for clustering gene expression data2005; 6: 289
- Analysis of concordance of different haplotype block partitioning algorithms2005; 6: 303
- Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process2005; 6: 285
- Internet-based profiler system as integrative framework to support translational research2005; 6: 304
- The distance-profile representation and its application to detection of distantly related protein families2005; 6: 282
- The Gene Set Builder: collation, curation, and distribution of sets of genes2005; 6: 305
- Construction of a nasopharyngeal carcinoma 2D/MS repository with Open Source XML Database – Xindice2006; 7: 13
- SuperMimic – Fitting peptide mimetics into protein structures2006; 7: 11
- A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators2005; 6: 301
- ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes2006; 7: 9
- preAssemble: a tool for automatic sequencer trace data processing2006; 7: 22
- Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine2005; 6: 310
- Finding biological process modifications in cancer tissues by mining gene expression correlations2006; 7: 6
- Fast-Find: A novel computational approach to analyzing combinatorial motifs2006; 7: 1
- Evaluation of methods for oligonucleotide array data via quantitative real-time PCR2006; 7: 23
- An approach for clustering gene expression data with error information2006; 7: 17
- Metabolic pathways variability and sequence/networks comparisons2006; 7: 24
- Utilization of two sample t-test statistics from redundant probe sets to evaluate different probe set algorithms in GeneChip studies2006; 7: 12
- Probabilistic annotation of protein sequences based on functional classifications2005; 6: 302
- OligoSpawn: a software tool for the design of overgo probes from large unigene datasets2006; 7: 7
- Avoiding inconsistencies over time and tracking difficulties in Applied Biosystems AB1700™/Panther™ probe-to-gene annotations2005; 6: 307
- Gene selection and classification of microarray data using random forest2006; 7: 3
- Prediction of protein structural class with Rough Sets2006; 7: 20
- Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasis2006; 7: 2
- Local protein structure prediction using discriminative models2006; 7: 14
- Construction and validation of the APOCHIP, a spotted oligo-microarray for the study of beta-cell apoptosis2005; 6: 311
- A reinforced merging methodology for mapping unique peptide motifs in members of protein families2006; 7: 38
- An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments2005; 6: 293
- In silico discovery of human natural antisense transcripts2006; 7: 18
- Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries2005; 6: 300
- A high level interface to SCOP and ASTRAL implemented in Python2006; 7: 10
- SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms2006; 7: 43
- Protein kinases associated with the yeast phosphoproteome2006; 7: 47
- A proposed metric for assessing the measurement quality of individual microarrays2006; 7: 35
- Comparison of normalization methods for CodeLink Bioarray data2005; 6: 309
- Analysis and visualization of chromosomal abnormalities in SNP data with SNPscan2006; 7: 25
- The comprehensive updated regulatory network of Escherichia coli K-122006; 7: 5
- GenoLink: a graph-based querying and browsing system for investigating the function of genes and proteins2006; 7: 21
- BAMarray™: Java software for Bayesian analysis of variance for microarray data2006; 7: 59
- FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries2006; 7: 57
- Protein structure similarity from principle component correlation analysis2006; 7: 40
- Discovering semantic features in the literature: a foundation for building functional associations2006; 7: 41
- Integrated analysis of gene expression by association rules discovery2006; 7: 54
- HotSwap for bioinformatics: A STRAP tutorial2006; 7: 64
- Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures2006; 7: 68
- Taxonomic colouring of phylogenetic trees of protein sequences2006; 7: 79
- NOXclass: prediction of protein-protein interaction types2006; 7: 27
- Similarity-based gene detection: using COGs to find evolutionarily-conserved ORFs2006; 7: 31
- Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling2006; 7: 26
- Gene annotation and network inference by phylogenetic profiling2006; 7: 80
- GPNN: Power studies and applications of a neural network method for detecting gene-gene interactions in studies of human disease2006; 7: 39
- GO-Diff: Mining functional differentiation between EST-based transcriptomes2006; 7: 72
- BIPAD: A web server for modeling bipartite sequence elements2006; 7: 76
- WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data2006; 7: 30
- An improved procedure for gene selection from microarray experiments using false discovery rate criterion2006; 7: 15
- Approximation properties of haplotype tagging2006; 7: 8