Transcription Factor Map Alignment of Promoter Regions
2006; 2(5): e49
Expression-Guided In Silico Evaluation of Candidate Cis Regulatory Codes for Drosophila Muscle Founder Cells
2006; 2(5): e53
Evolutionary Potential of a Duplicated Repressor-Operator Pair: Simulating Pathways Using Mutation Data
2006; 2(5): e58
Correction: Folding Very Short Peptides Using Molecular Dynamics
2006; 2(5): e60
Correction: Spatiotemporal Expression Control Correlates with Intragenic Scaffold Matrix Attachment Regions (S/MARs) in Arabidopsis thaliana
2006; 2(6): e67
Identification and Analysis of Genes and Pseudogenes within Duplicated Regions in the Human and Mouse Genomes
2006; 2(6): e76
Functional Classification Using Phylogenomic Inference
2006; 2(6): e77
Noise-Induced Min Phenotypes in E. coli
2006; 2(6): e80
Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System
2006; 2(7): e59
From Functional Genomics to Functional Immunomics: New Challenges, Old Problems, Big Rewards
2006; 2(7): e81
Authors' Reply
2006; 2(7): e83
On the Estimation of Intron Evolution
2006; 2(7): e84
Circadian Rhythmicity by Autocatalysis
2006; 2(7): e96
Correction: How Does Cross-Reactive Stimulation Affect the Longevity of CD8+ T Cell Memory?
2006; 2(7): e97
Molecular Simulations of Cotranslational Protein Folding: Fragment Stabilities, Folding Cooperativity, and Trapping in the Ribosome
2006; 2(7): e98
The Ion Channel Inverse Problem: Neuroinformatics Meets Biophysics
2006; 2(8): e91
One Year of PLoS Computational Biology
2006; 2(8): e111
Correction: Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance
2006; 2(8): e112
Expansion of Protein Domain Repeats
2006; 2(8): e114
Ten Simple Rules for Reviewers
2006; 2(9): e110
Can Transgenic Maize Affect Soil Microbial Communities?
2006; 2(9): e128
Phylogenetic Reconstruction of Orthology, Paralogy, and Conserved Synteny for Dog and Human
2006; 2(9): e133
Targeted Molecular Dynamics Study of C-Loop Closure and Channel Gating in Nicotinic Receptors
2006; 2(9): e134
A Biocurator Perspective: Annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank
2006; 2(10): e99
The Biocurator: Connecting and Enhancing Scientific Data
2006; 2(10): e125
Mapping Information Flow in Sensorimotor Networks
2006; 2(10): e144
Ab Initio Modeling of the Herpesvirus VP26 Core Domain Assessed by CryoEM Density
2006; 2(10): e146
Correction: Emergence of Protein Fold Families through Rational Design
2006; 2(10): e149
Selection of Target Sites for Mobile DNA Integration in the Human Genome
2006; 2(11): e157
Robustness and Fragility in Immunosenescence
2006; 2(11): e160
Meta-Analysis of Differentiating Mouse Embryonic Stem Cell Gene Expression Kinetics Reveals Early Change of a Small Gene Set
2006; 2(11): e158
Computational Inference of Neural Information Flow Networks
2006; 2(11): e161
Identification of the Proliferation/Differentiation Switch in the Cellular Network of Multicellular Organisms
2006; 2(11): e145
Ten Simple Rules for Selecting a Postdoctoral Position
2006; 2(11): e121
Correction: Ten Simple Rules for Selecting a Postdoctoral Position
2006; 2(12): e181
Automated Querying of Genome Databases
2007; 3(1): e1
Identification of Functional Subclasses in the DJ-1 Superfamily Proteins
2007; 3(1): e15
Emergent Dynamics of Thymocyte Development and Lineage Determination
2007; 3(1): e13
Detecting Key Structural Features within Highly Recombined Genes
2007; 3(1): e14
In Remembrance: Reinhart Heinrich 1946–2006
2007; 3(1): e18
Moving Education Forward
2007; 3(1): e19
Correction: The Role of Compensatory Mutations in the Emergence of Drug Resistance
2007; 3(2): e46
Correction: Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays
2007; 3(2): e40
Correction: The Genome: An Outsider's View
2007; 3(2): e47
Assessing the Nature of Lipid Raft Membranes
2007; 3(2): e34
Persistent Activity in Neural Networks with Dynamic Synapses
2007; 3(2): e35
Improving the Caenorhabditis elegans Genome Annotation Using Machine Learning
2007; 3(2): e20
From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer Research
2007; 3(2): e12
Ten Simple Rules for a Successful Collaboration
2007; 3(3): e44
Query-Dependent Banding (QDB) for Faster RNA Similarity Searches
2007; 3(3): e56
Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage
2007; 3(3): e58
Potential Energy Landscape and Robustness of a Gene Regulatory Network: Toggle Switch
2007; 3(3): e60
DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies
2007; 3(3): e61
Correction: Specificity and Evolvability in Eukaryotic Protein Interaction Networks
2007; 3(3): e70
Dog as an Outgroup to Human and Mouse
2007; 3(4): e74
Correction: (A)Symmetric Stem Cell Replication and Cancer
2007; 3(4): e83
Coping with Viral Diversity in HIV Vaccine Design
2007; 3(4): e75
Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners
2007; 3(4): e43
Patterns of Mesenchymal Condensation in a Multiscale, Discrete Stochastic Model
2007; 3(4): e76
Ten Simple Rules for Making Good Oral Presentations
2007; 3(4): e77
RNAi Development
2007; 3(4): e80
Fundamental Limits to Position Determination by Concentration Gradients
2007; 3(4): e78
“Simple Rules for Editors”? Here is One Rule to Tackle Neglected Problems of Publishing
2007; 3(5): e88
“Simple Rules for Editors”? Here Is One Rule to Tackle Neglected Problems of Publishing: Response from PLoS
2007; 3(5): e89
Prediction of Functional Sites Based on the Fuzzy Oil Drop Model
2007; 3(5): e94
ISMB/ECCB 2007: The Premier Conference on Computational Biology
2007; 3(5): e96
Bang-Bang Control of Feeding: Role of Hypothalamic and Satiety Signals
2007; 3(5): e97
Ten Simple Rules for a Good Poster Presentation
2007; 3(5): e102
Correction: Persistent Activity in Neural Networks with Dynamic Synapses
2007; 3(5): e104